rfaRm
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see rfaRm.
An R interface to the Rfam database
Bioconductor version: 3.19
rfaRm provides a client interface to the Rfam database of RNA families. Data that can be retrieved include RNA families, secondary structure images, covariance models, sequences within each family, alignments leading to the identification of a family and secondary structures in the dot-bracket format.
Author: Lara Selles Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro
Maintainer: Lara Selles Vidal <lara.selles at oist.jp>, Rafael Ayala <rafael.ayala at oist.jp>
citation("rfaRm")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rfaRm")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rfaRm")| rfaRm | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, FunctionalGenomics, MultipleSequenceAlignment, Software, ThirdPartyClient, Visualization |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | httr, stringi, rsvg, magick, data.table, Biostrings, utils, rvest, xml2, IRanges, S4Vectors, jsonlite |
| System Requirements | |
| URL |
See More
| Suggests | R4RNA, treeio, knitr, BiocStyle, rmarkdown, BiocGenerics, RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rfaRm_1.16.0.tar.gz |
| Windows Binary (x86_64) | rfaRm_1.16.0.zip |
| macOS Binary (x86_64) | rfaRm_1.16.0.tgz |
| macOS Binary (arm64) | rfaRm_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rfaRm |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rfaRm |
| Bioc Package Browser | https://code.bioconductor.org/browse/rfaRm/ |
| Package Short Url | https://bioconductor.org/packages/rfaRm/ |
| Package Downloads Report | Download Stats |