multiOmicsViz
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see multiOmicsViz.
Plot the effect of one omics data on other omics data along the chromosome
Bioconductor version: 3.19
Calculate the spearman correlation between the source omics data and other target omics data, identify the significant correlations and plot the significant correlations on the heat map in which the x-axis and y-axis are ordered by the chromosomal location.
Author: Jing Wang <jingwang.uestc at gmail.com>
Maintainer: Jing Wang <jingwang.uestc at gmail.com>
citation("multiOmicsViz")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("multiOmicsViz")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Software, SystemsBiology, Visualization |
| Version | 1.28.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7.5 years) |
| License | LGPL |
| Depends | R (>= 3.3.2) |
| Imports | methods, parallel, doParallel, foreach, grDevices, graphics, utils, SummarizedExperiment, stats |
| System Requirements | |
| URL |
See More
| Suggests | BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | multiOmicsViz_1.28.0.zip |
| macOS Binary (x86_64) | multiOmicsViz_1.28.0.tgz |
| macOS Binary (arm64) | multiOmicsViz_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/multiOmicsViz |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/multiOmicsViz |
| Package Short Url | https://bioconductor.org/packages/multiOmicsViz/ |
| Package Downloads Report | Download Stats |