Rcollectl

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see Rcollectl.

Help use collectl with R in Linux, to measure resource consumption in R processes

Bioconductor version: 3.19

Provide functions to obtain instrumentation data on processes in a unix environment. Parse output of a collectl run. Vizualize aspects of system usage over time, with annotation.

Author: Vincent Carey [aut, cre] , Yubo Cheng [aut]

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("Rcollectl")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rcollectl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rcollectl")

Rcollectl	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software
Version	1.4.0
In Bioconductor since	BioC 3.17 (R-4.3) (1.5 years)
License	Artistic-2.0
Depends
Imports	utils, ggplot2, lubridate, processx
System Requirements	collectl
URL	https://github.com/vjcitn/Rcollectl
Bug Reports	https://support.bioconductor.org/t/Rcollectl

Suggests	knitr, BiocStyle, knitcitations, sessioninfo, rmarkdown, testthat, covr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rcollectl_1.4.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/Rcollectl
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rcollectl
Bioc Package Browser	https://code.bioconductor.org/browse/Rcollectl/
Package Short Url	https://bioconductor.org/packages/Rcollectl/
Package Downloads Report	Download Stats