PloGO2
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PloGO2.
Plot Gene Ontology and KEGG pathway Annotation and Abundance
Bioconductor version: 3.19
Functions for enrichment analysis and plotting gene ontology or KEGG pathway information for multiple data subsets at the same time. It also enables encorporating multiple conditions and abundance data.
Author: Dana Pascovici, Jemma Wu
Maintainer: Jemma Wu <jemma.wu at mq.edu.au>, Dana Pascovici <dana.pascovici at mq.edu.au>
citation("PloGO2")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PloGO2")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Software, Visualization |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | GPL-2 |
| Depends | R (>= 4.0), GO.db, GOstats |
| Imports | lattice, httr, openxlsx, xtable |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | PloGO2_1.16.0.zip |
| macOS Binary (x86_64) | PloGO2_1.16.0.tgz |
| macOS Binary (arm64) | PloGO2_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PloGO2 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PloGO2 |
| Package Short Url | https://bioconductor.org/packages/PloGO2/ |
| Package Downloads Report | Download Stats |