MetaVolcanoR
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MetaVolcanoR.
Gene Expression Meta-analysis Visualization Tool
Bioconductor version: 3.19
MetaVolcanoR combines differential gene expression results. It implements three strategies to summarize differential gene expression from different studies. i) Random Effects Model (REM) approach, ii) a p-value combining-approach, and iii) a vote-counting approach. In all cases, MetaVolcano exploits the Volcano plot reasoning to visualize the gene expression meta-analysis results.
Author: Cesar Prada [aut, cre], Diogenes Lima [aut], Helder Nakaya [aut, ths]
Maintainer: Cesar Prada <cesar.prada.medina at gmail.com>
citation("MetaVolcanoR")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetaVolcanoR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics, mRNAMicroarray |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
| License | GPL-3 |
| Depends | R (>= 4.1.1) |
| Imports | methods, data.table, dplyr, tidyr, plotly, ggplot2, cowplot, parallel, metafor, metap, rlang, topconfects, grDevices, graphics, stats, htmlwidgets |
| System Requirements | |
| URL |
See More
| Suggests | knitr, markdown, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | MetaVolcanoR_1.18.0.zip (64-bit only) |
| macOS Binary (x86_64) | MetaVolcanoR_1.18.0.tgz |
| macOS Binary (arm64) | MetaVolcanoR_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaVolcanoR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaVolcanoR |
| Package Short Url | https://bioconductor.org/packages/MetaVolcanoR/ |
| Package Downloads Report | Download Stats |