GOSim
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GOSim.
Computation of functional similarities between GO terms and gene products; GO enrichment analysis
Bioconductor version: 3.19
This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis
Author: Holger Froehlich <frohlich at bit.uni-bonn.de>
Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>
citation("GOSim")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GOSim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Clustering, GO, Pathways, Software |
| Version | 1.42.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
| License | GPL (>= 2) |
| Depends | GO.db, annotate |
| Imports | org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | Rcpp |
| Enhances | igraph |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | GOSim_1.42.0.zip |
| macOS Binary (x86_64) | GOSim_1.42.0.tgz |
| macOS Binary (arm64) | GOSim_1.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GOSim |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GOSim |
| Package Short Url | https://bioconductor.org/packages/GOSim/ |
| Package Downloads Report | Download Stats |