BioNetStat
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see BioNetStat.
Biological Network Analysis
Bioconductor version: 3.19
A package to perform differential network analysis, differential node analysis (differential coexpression analysis), network and metabolic pathways view.
Author: VinÃcius Jardim, Suzana Santos, André Fujita, and Marcos Buckeridge
Maintainer: Vinicius Jardim <viniciusjc at gmail.com>
citation("BioNetStat")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BioNetStat")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, ImmunoOncology, Metabolomics, Microarray, Network, NetworkInference, Pathways, Proteomics, RNASeq, Sequencing, Software, SystemsBiology |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 4.0), shiny, igraph, shinyBS, pathview, DT |
| Imports | BiocParallel, RJSONIO, whisker, yaml, pheatmap, ggplot2, plyr, utils, stats, RColorBrewer, Hmisc, psych, knitr, rmarkdown, markdown |
| System Requirements | |
| URL | http://github.com/jardimViniciusC/BioNetStat |
| Bug Reports | http://github.com/jardimViniciusC/BioNetStat/issues |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/BioNetStat |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BioNetStat |
| Package Short Url | https://bioconductor.org/packages/BioNetStat/ |
| Package Downloads Report | Download Stats |