Selega A, Granneman S, Sanguinetti G (2016). BUMHMM: Computational pipeline for computing probability of modification from structure probing experiment data.. https://github.com/alinaselega/BUMHMM - R package version 1.26.0, http://www.bioconductor.org/packages/BUMHMM.

Selega A, Sirocchi C, Iosub I, Granneman S, Sanguinetti G (2016). “Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments.” Nature Methods. doi:10.1038/nmeth.4068, http://www.nature.com/nmeth/journal/v14/n1/full/nmeth.4068.html.