Changes in version 1.8.0                        

  - Fifth release on bioconductor

                        Changes in version 1.5.3                        

  - Removed citr package from DESCRIPTION

                        Changes in version 1.4.0                        

  - Third release on bioconductor

                        Changes in version 1.3.1                        

  - Added files to fix bugs

                        Changes in version 1.2.0                        

  - Second release on bioconductor

                       Changes in version 1.1.14                        

  - In mergeBSJunctions function:
      - Since different detection tools can report sligtly different
        coordinates before grouping the back-spliced junctions, it is
        now possible to fix the latter using the gtf file. See param
        fixBSJsWithGTF.

                        Changes in version 1.1.5                        

  - In plotMotifs function:
      - Before only motifs found in the foreground sequences were
        reported. Now also motifs found in the background are reported
        in the output.

                        Changes in version 1.1.4                        

  - In getMotifs function:
      - Fixed a bug when trimming the BSJ sequences. E.g. by setting
        width = 6, the BSJ sequences are trimmed so that only 5
        nucleotides are left at each side of the BSJ. If width = 7, then
        6 nucleotides are left at each side of the BSJ etc.

                        Changes in version 1.1.3                        

  - In plotMotifs function:
      - Added n param for filtering the motifs.

                        Changes in version 1.1.2                        

  - Improved vignettes

  - In plotMotifs function:
    
      - To avoid infinity as a value for fold change, 1 was added to
        number of occurences of each motif found in the foreground and
        background target sequences before the normalization.
    
      - Added angle param for the rotation angle of the axis labels.
    
      - Added removeNegLog2FC param to remove the RBPs having a negative
        log2FC.

  - volcanoPlot function:
    
      - Added geneSet param that allows to show only specified host gene
        names.

  - In getMotifs function:
    
      - Included possibilities to use motifs of RBPs from MEME database

                        Changes in version 1.0.0                        

  - First release on bioconductor