rhdf5client
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see rhdf5client.
Access HDF5 content from HDF Scalable Data Service
Bioconductor version: 3.17
This package provides functionality for reading data from HDF Scalable Data Service from within R. The HSDSArray function bridges from HSDS to the user via the DelayedArray interface. Bioconductor manages an open HSDS instance graciously provided by John Readey of the HDF Group.
Author: Samuela Pollack [aut], Shweta Gopaulakrishnan [aut], BJ Stubbs [aut], Alexey Sergushichev [aut], Vincent Carey [cre, aut]
Maintainer: Vincent Carey <stvjc at channing.harvard.edu>
citation("rhdf5client")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rhdf5client")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rhdf5client")| HSDSArray DelayedArray backend | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.22.3 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6), methods, DelayedArray |
| Imports | httr, rjson, utils, data.table |
| System Requirements | |
| URL |
See More
| Suggests | knitr, testthat, BiocStyle, DT, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | restfulSE |
| Suggests Me | BiocOncoTK, HumanTranscriptomeCompendium, restfulSEData |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rhdf5client_1.22.3.tar.gz |
| Windows Binary | rhdf5client_1.22.3.zip |
| macOS Binary (x86_64) | rhdf5client_1.22.3.tgz |
| macOS Binary (arm64) | rhdf5client_1.22.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rhdf5client |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rhdf5client |
| Bioc Package Browser | https://code.bioconductor.org/browse/rhdf5client/ |
| Package Short Url | https://bioconductor.org/packages/rhdf5client/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |