oppti
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see oppti.
Outlier Protein and Phosphosite Target Identifier
Bioconductor version: 3.17
The aim of oppti is to analyze protein (and phosphosite) expressions to find outlying markers for each sample in the given cohort(s) for the discovery of personalized actionable targets.
Author: Abdulkadir Elmas
Maintainer: Abdulkadir Elmas <abdulkadir.elmas at mssm.edu>
citation("oppti")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("oppti")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("oppti")| Outlier Protein and Phosphosite Target Identifier | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiomedicalInformatics, DifferentialExpression, GeneExpression, GeneTarget, Network, Proteomics, Regression, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | MIT |
| Depends | R (>= 3.5) |
| Imports | limma, stats, reshape, ggplot2, grDevices, RColorBrewer, pheatmap, knitr, methods, devtools, parallelDist |
| System Requirements | |
| URL | https://github.com/Huang-lab/oppti |
| Bug Reports | https://github.com/Huang-lab/oppti/issues |
See More
| Suggests | markdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | oppti_1.14.0.tar.gz |
| Windows Binary | oppti_1.14.0.zip (64-bit only) |
| macOS Binary (x86_64) | oppti_1.14.0.tgz |
| macOS Binary (arm64) | oppti_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/oppti |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/oppti |
| Bioc Package Browser | https://code.bioconductor.org/browse/oppti/ |
| Package Short Url | https://bioconductor.org/packages/oppti/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |