microbiome

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see microbiome.

Microbiome Analytics

Bioconductor version: 3.17

Utilities for microbiome analysis.

Author: Leo Lahti [aut, cre] , Sudarshan Shetty [aut]

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, enter citation("microbiome")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("microbiome")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("microbiome")

biocViews	Metagenomics, Microbiome, Sequencing, Software, SystemsBiology
Version	1.22.0
In Bioconductor since	BioC 3.6 (R-3.4) (6.5 years)
License	BSD_2_clause + file LICENSE
Depends	R (>= 3.6.0), phyloseq, ggplot2
Imports	Biostrings, compositions, dplyr, reshape2, Rtsne, scales, stats, tibble, tidyr, utils, vegan
System Requirements
URL	http://microbiome.github.io/microbiome
Bug Reports	https://github.com/microbiome/microbiome/issues

Suggests	BiocGenerics, BiocStyle, Cairo, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me	MicrobiomeSurv
Suggests Me	ANCOMBC
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	microbiome_1.22.0.tar.gz
Windows Binary	microbiome_1.22.0.zip
macOS Binary (x86_64)	microbiome_1.22.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/microbiome
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/microbiome
Bioc Package Browser	https://code.bioconductor.org/browse/microbiome/
Package Short Url	https://bioconductor.org/packages/microbiome/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive