made4
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see made4.
Multivariate analysis of microarray data using ADE4
Bioconductor version: 3.17
Multivariate data analysis and graphical display of microarray data. Functions include for supervised dimension reduction (between group analysis) and joint dimension reduction of 2 datasets (coinertia analysis). It contains functions that require R package ade4.
Author: Aedin Culhane
Maintainer: Aedin Culhane <Aedin at jimmy.harvard.edu>
citation("made4")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("made4")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("made4")| Authoring R Markdown vignettes | HTML | R Script |
| Reference Manual |
Details
| biocViews | Classification, Clustering, DimensionReduction, GeneExpression, Microarray, MultipleComparison, PrincipalComponent, Sequencing, Software, Transcriptomics |
| Version | 1.74.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | Artistic-2.0 |
| Depends | RColorBrewer, gplots, scatterplot3d, Biobase, SummarizedExperiment |
| Imports | ade4 |
| System Requirements | |
| URL | http://www.hsph.harvard.edu/aedin-culhane/ |
See More
| Suggests | affy, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | deco, omicade4 |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | made4_1.74.0.tar.gz |
| Windows Binary | made4_1.74.0.zip |
| macOS Binary (x86_64) | made4_1.74.0.tgz |
| macOS Binary (arm64) | made4_1.74.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/made4 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/made4 |
| Bioc Package Browser | https://code.bioconductor.org/browse/made4/ |
| Package Short Url | https://bioconductor.org/packages/made4/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |