interacCircos
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see interacCircos.
The Generation of Interactive Circos Plot
Bioconductor version: 3.17
Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.
Author: Zhe Cui [aut, cre]
Maintainer: Zhe Cui <mrcuizhe at gmail.com>
citation("interacCircos")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("interacCircos")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("interacCircos")| interacCircos | HTML | R Script |
| Reference Manual |
Details
| biocViews | Software, Visualization |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | GPL-3 |
| Depends | R (>= 4.1) |
| Imports | RColorBrewer, htmlwidgets, plyr, methods |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | interacCircos_1.10.0.tar.gz |
| Windows Binary | interacCircos_1.10.0.zip |
| macOS Binary (x86_64) | interacCircos_1.10.0.tgz |
| macOS Binary (arm64) | interacCircos_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/interacCircos |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/interacCircos |
| Bioc Package Browser | https://code.bioconductor.org/browse/interacCircos/ |
| Package Short Url | https://bioconductor.org/packages/interacCircos/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |