eds
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see eds.
eds: Low-level reader for Alevin EDS format
Bioconductor version: 3.17
This packages provides a single function, readEDS. This is a low-level utility for reading in Alevin EDS format into R. This function is not designed for end-users but instead the package is predominantly for simplifying package dependency graph for other Bioconductor packages.
Author: Avi Srivastava [aut, cre], Michael Love [aut, ctb]
Maintainer: Avi Srivastava <asrivastava at cs.stonybrook.edu>
citation("eds")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("eds")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("eds")
eds: Low-level reader function for Alevin EDS format | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | GeneExpression, RNASeq, Sequencing, SingleCell, Software |
Version | 1.2.0 |
In Bioconductor since | BioC 3.16 (R-4.2) (1.5 years) |
License | GPL-2 |
Depends | Matrix |
Imports | Rcpp |
System Requirements | C++11 |
URL | https://github.com/mikelove/eds |
See More
Suggests | knitr, tximportData, testthat (>= 3.0.0) |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | singleCellTK |
Suggests Me | tximport |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | eds_1.2.0.tar.gz |
Windows Binary | eds_1.2.0.zip |
macOS Binary (x86_64) | eds_1.2.0.tgz |
macOS Binary (arm64) | eds_1.2.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/eds |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/eds |
Bioc Package Browser | https://code.bioconductor.org/browse/eds/ |
Package Short Url | https://bioconductor.org/packages/eds/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.17 | Source Archive |