dupRadar
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see dupRadar.
Assessment of duplication rates in RNA-Seq datasets
Bioconductor version: 3.17
Duplication rate quality control for RNA-Seq datasets.
Author: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>
Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>
Citation (from within R, enter
citation("dupRadar")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("dupRadar")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("dupRadar")| Using dupRadar | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology, QualityControl, RNASeq, Sequencing, Software, Technology |
| Version | 1.30.3 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.2.0) |
| Imports | Rsubread(>= 1.14.1), KernSmooth |
| System Requirements | |
| URL | https://www.bioconductor.org/packages/dupRadar https://ssayols.github.io/dupRadar/index.html |
See More
| Suggests | BiocStyle, knitr, rmarkdown, AnnotationHub |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | dupRadar_1.30.3.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | dupRadar_1.30.3.tgz |
| macOS Binary (arm64) | dupRadar_1.30.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/dupRadar |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/dupRadar |
| Bioc Package Browser | https://code.bioconductor.org/browse/dupRadar/ |
| Package Short Url | https://bioconductor.org/packages/dupRadar/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |