drugTargetInteractions
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see drugTargetInteractions.
Drug-Target Interactions
Bioconductor version: 3.17
Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers. The required drug-target interaction information is obained from a local SQLite instance of the ChEMBL database. ChEMBL has been chosen for this purpose, because it provides one of the most comprehensive and best annotatated knowledge resources for drug-target information available in the public domain.
Author: Thomas Girke [cre, aut]
Maintainer: Thomas Girke <thomas.girke at ucr.edu>
citation("drugTargetInteractions")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("drugTargetInteractions")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("drugTargetInteractions")| Drug-Target Interactions | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiomedicalInformatics, Cheminformatics, Metabolomics, Pharmacogenetics, Pharmacogenomics, Proteomics, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | Artistic-2.0 |
| Depends | methods, R (>= 4.1) |
| Imports | utils, RSQLite, UniProt.ws, biomaRt, ensembldb, BiocFileCache, dplyr, rappdirs, AnnotationFilter, S4Vectors |
| System Requirements | |
| URL | https://github.com/girke-lab/drugTargetInteractions |
| Bug Reports | https://github.com/girke-lab/drugTargetInteractions |
See More
| Suggests | RUnit, BiocStyle, knitr, rmarkdown, ggplot2, reshape2, DT, EnsDb.Hsapiens.v86 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | drugTargetInteractions_1.8.0.tar.gz |
| Windows Binary | drugTargetInteractions_1.8.0.zip (64-bit only) |
| macOS Binary (x86_64) | drugTargetInteractions_1.8.0.tgz |
| macOS Binary (arm64) | drugTargetInteractions_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/drugTargetInteractions |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/drugTargetInteractions |
| Bioc Package Browser | https://code.bioconductor.org/browse/drugTargetInteractions/ |
| Package Short Url | https://bioconductor.org/packages/drugTargetInteractions/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |