beachmat
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see beachmat.
Compiling Bioconductor to Handle Each Matrix Type
Bioconductor version: 3.17
Provides a consistent C++ class interface for reading from and writing data to a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, third-party S4 classes may be supported by external linkage, while all other matrices are handled by DelayedArray block processing.
Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("beachmat")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("beachmat")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("beachmat")| 1. Developer guide | HTML | R Script |
| 2. Reading data from R matrices in C++ (v2) | HTML | R Script |
| 3. Writing data into R matrix objects (v2) | HTML | R Script |
| 4. Supporting arbitrary matrix classes (v2) | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DataRepresentation, Infrastructure, Software |
| Version | 2.16.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | methods, DelayedArray(>= 0.15.14), BiocGenerics, Matrix, Rcpp |
| System Requirements | C++11 |
| URL |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown, rcmdcheck, BiocParallel, HDF5Array |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | batchelor, BiocSingular, DropletUtils, mumosa, scater, scran, scuttle, SingleR |
| Suggests Me | bsseq, glmGamPoi, mbkmeans, PCAtools, scCB2 |
| Links To Me | BiocSingular, bsseq, DropletUtils, glmGamPoi, mbkmeans, PCAtools, scran, scuttle, SingleR |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | beachmat_2.16.0.tar.gz |
| Windows Binary | beachmat_2.16.0.zip (64-bit only) |
| macOS Binary (x86_64) | beachmat_2.16.0.tgz |
| macOS Binary (arm64) | beachmat_2.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/beachmat |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/beachmat |
| Bioc Package Browser | https://code.bioconductor.org/browse/beachmat/ |
| Package Short Url | https://bioconductor.org/packages/beachmat/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |