alabaster.base
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see alabaster.base.
Save Bioconductor Objects To File
Bioconductor version: 3.17
Save Bioconductor data structures into file artifacts, and load them back into memory. This is a more robust and portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("alabaster.base")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("alabaster.base")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("alabaster.base")| Creating new applications | HTML | R Script |
| Extending to new data structures | HTML | R Script |
| Saving and loading artifacts | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | DataImport, DataRepresentation, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1 year) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | alabaster.schemas, methods, utils, S4Vectors, rhdf5, jsonlite, jsonvalidate, Rcpp |
| System Requirements | C++17, GNU make |
| URL |
See More
| Suggests | BiocStyle, rmarkdown, knitr, testthat, digest, Matrix |
| Linking To | Rcpp, Rhdf5lib |
| Enhances | |
| Depends On Me | alabaster, alabaster.bumpy, alabaster.mae, alabaster.ranges, alabaster.sce, alabaster.se, alabaster.spatial, alabaster.string, alabaster.vcf |
| Imports Me | alabaster.matrix |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | alabaster.base_1.0.0.tar.gz |
| Windows Binary | alabaster.base_1.0.0.zip (64-bit only) |
| macOS Binary (x86_64) | alabaster.base_1.0.0.tgz |
| macOS Binary (arm64) | alabaster.base_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/alabaster.base |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/alabaster.base |
| Bioc Package Browser | https://code.bioconductor.org/browse/alabaster.base/ |
| Package Short Url | https://bioconductor.org/packages/alabaster.base/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |