TrajectoryUtils
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see TrajectoryUtils.
Single-Cell Trajectory Analysis Utilities
Bioconductor version: 3.17
Implements low-level utilities for single-cell trajectory analysis, primarily intended for re-use inside higher-level packages. Include a function to create a cluster-level minimum spanning tree and data structures to hold pseudotime inference results.
Author: Aaron Lun [aut, cre], Kelly Street [aut]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("TrajectoryUtils")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TrajectoryUtils")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TrajectoryUtils")| Trajectory utilities | HTML | R Script |
| Reference Manual |
Details
| biocViews | GeneExpression, SingleCell, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | GPL-3 |
| Depends | SingleCellExperiment |
| Imports | methods, stats, Matrix, igraph, S4Vectors, SummarizedExperiment |
| System Requirements | |
| URL | https://bioconductor.org/packages/TrajectoryUtils |
| Bug Reports | https://github.com/LTLA/TrajectoryUtils/issues |
See More
| Suggests | BiocNeighbors, DelayedArray, DelayedMatrixStats, BiocParallel, testthat, knitr, BiocStyle, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | slingshot, TSCAN |
| Imports Me | condiments, singleCellTK, tradeSeq |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TrajectoryUtils_1.8.0.tar.gz |
| Windows Binary | TrajectoryUtils_1.8.0.zip |
| macOS Binary (x86_64) | TrajectoryUtils_1.8.0.tgz |
| macOS Binary (arm64) | TrajectoryUtils_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TrajectoryUtils |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TrajectoryUtils |
| Bioc Package Browser | https://code.bioconductor.org/browse/TrajectoryUtils/ |
| Package Short Url | https://bioconductor.org/packages/TrajectoryUtils/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |