TDbasedUFEadv
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see TDbasedUFEadv.
Advanced package of tensor decomposition based unsupervised feature extraction
Bioconductor version: 3.17
This is an advanced version of TDbasedUFE, which is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. In contrast to TDbasedUFE which can perform simple the feature selection and the multiomics analyses, this package can perform more complicated and advanced features, but they are not so popularly required. Only users who require more specific features can make use of its functionality.
Author: Y-h. Taguchi [aut, cre] 
Maintainer: Y-h. Taguchi <tag at granular.com>
citation("TDbasedUFEadv")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TDbasedUFEadv")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TDbasedUFEadv")| Enrichment | HTML | R Script |
| Explanation of TDbasedUFEadv | HTML | R Script |
| How to use TDbasedUFEadv | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1 year) |
| License | GPL-3 |
| Depends | |
| Imports | TDbasedUFE, Biobase, GenomicRanges, utils, rTensor, methods, graphics, RTCGA, stats, enrichplot, DOSE, STRINGdb, enrichR, hash, shiny |
| System Requirements | |
| URL | https://github.com/tagtag/TDbasedUFEadv |
| Bug Reports | https://github.com/tagtag/TDbasedUFEadv/issues |
See More
| Suggests | knitr, rmarkdown, testthat (>= 3.0.0), RTCGA.rnaseq, RTCGA.clinical, BiocStyle, MOFAdata |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TDbasedUFEadv_1.0.0.tar.gz |
| Windows Binary | TDbasedUFEadv_1.0.0.zip |
| macOS Binary (x86_64) | TDbasedUFEadv_1.0.0.tgz |
| macOS Binary (arm64) | TDbasedUFEadv_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TDbasedUFEadv |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TDbasedUFEadv |
| Bioc Package Browser | https://code.bioconductor.org/browse/TDbasedUFEadv/ |
| Package Short Url | https://bioconductor.org/packages/TDbasedUFEadv/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |