SigFuge

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see SigFuge.

Bioconductor version: 3.17

Algorithm for testing significance of clustering in RNA-seq data.

Author: Patrick Kimes, Christopher Cabanski

Maintainer: Patrick Kimes <patrick.kimes at gmail.com>

Citation (from within R, enter citation("SigFuge")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SigFuge")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SigFuge")

SigFuge Tutorial	PDF	R Script
Reference Manual	PDF

biocViews	Clustering, ImmunoOncology, RNASeq, Software, Visualization
Version	1.38.0
In Bioconductor since	BioC 2.13 (R-3.0) (10.5 years)
License	GPL-3
Depends	R (>= 3.5.0), GenomicRanges
Imports	ggplot2, matlab, reshape, sigclust
System Requirements
URL

Suggests	org.Hs.eg.db, prebsdata, Rsamtools(>= 1.17.0), TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle
Linking To
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Depends On Me
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Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	SigFuge_1.38.0.tar.gz
Windows Binary	SigFuge_1.38.0.zip
macOS Binary (x86_64)	SigFuge_1.38.0.tgz
macOS Binary (arm64)	SigFuge_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SigFuge
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SigFuge
Bioc Package Browser	https://code.bioconductor.org/browse/SigFuge/
Package Short Url	https://bioconductor.org/packages/SigFuge/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive