ScaledMatrix
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ScaledMatrix.
Creating a DelayedMatrix of Scaled and Centered Values
Bioconductor version: 3.17
Provides delayed computation of a matrix of scaled and centered values. The result is equivalent to using the scale() function but avoids explicit realization of a dense matrix during block processing. This permits greater efficiency in common operations, most notably matrix multiplication.
Author: Aaron Lun [aut, cre, cph]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("ScaledMatrix")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ScaledMatrix")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ScaledMatrix")| Using the ScaledMatrix | HTML | R Script |
| Reference Manual |
Details
| biocViews | DataRepresentation, Software |
| Version | 1.8.1 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | GPL-3 |
| Depends | |
| Imports | methods, Matrix, S4Vectors, DelayedArray |
| System Requirements | |
| URL | https://github.com/LTLA/ScaledMatrix |
| Bug Reports | https://github.com/LTLA/ScaledMatrix/issues |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown, BiocSingular, DelayedMatrixStats |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | batchelor, BiocSingular, mumosa, scPCA |
| Suggests Me | scran |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ScaledMatrix_1.8.1.tar.gz |
| Windows Binary | ScaledMatrix_1.8.1.zip |
| macOS Binary (x86_64) | ScaledMatrix_1.8.1.tgz |
| macOS Binary (arm64) | ScaledMatrix_1.8.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ScaledMatrix |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ScaledMatrix |
| Bioc Package Browser | https://code.bioconductor.org/browse/ScaledMatrix/ |
| Package Short Url | https://bioconductor.org/packages/ScaledMatrix/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |