SISPA
This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SISPA.
SISPA: Method for Sample Integrated Set Profile Analysis
Bioconductor version: 3.17
Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.
Author: Bhakti Dwivedi and Jeanne Kowalski
Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>
citation("SISPA")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SISPA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SISPA")| SISPA:Method for Sample Integrated Set Profile Analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneSetEnrichment, GenomeWideAssociation, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.5), genefilter, GSVA, changepoint |
| Imports | data.table, plyr, ggplot2 |
| System Requirements | |
| URL |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SISPA_1.30.0.tar.gz |
| Windows Binary | SISPA_1.30.0.zip (64-bit only) |
| macOS Binary (x86_64) | SISPA_1.30.0.tgz |
| macOS Binary (arm64) | SISPA_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SISPA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SISPA |
| Bioc Package Browser | https://code.bioconductor.org/browse/SISPA/ |
| Package Short Url | https://bioconductor.org/packages/SISPA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |