RTCA
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see RTCA.
Open-source toolkit to analyse data from xCELLigence System (RTCA)
Bioconductor version: 3.17
Import, analyze and visualize data from Roche(R) xCELLigence RTCA systems. The package imports real-time cell electrical impedance data into R. As an alternative to commercial software shipped along the system, the Bioconductor package RTCA provides several unique transformation (normalization) strategies and various visualization tools.
Author: Jitao David Zhang
Maintainer: Jitao David Zhang <davidvonpku at gmail.com>
citation("RTCA")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RTCA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RTCA")| Introduction to Data Analysis of the Roche xCELLigence System with RTCA Package | R Script | |
| RTCAtransformation: Discussion of transformation methods of RTCA data | R Script | |
| Reference Manual |
Details
| biocViews | CellBasedAssays, ImmunoOncology, Infrastructure, Software, TimeCourse, Visualization |
| Version | 1.52.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (14.5 years) |
| License | LGPL-3 |
| Depends | methods, stats, graphics, Biobase, RColorBrewer, gtools |
| Imports | |
| System Requirements | |
| URL | http://code.google.com/p/xcelligence/ http://www.xcelligence.roche.com/ http://www.nextbiomotif.com/Home/scientific-programming |
See More
| Suggests | xtable |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RTCA_1.52.0.tar.gz |
| Windows Binary | RTCA_1.52.0.zip (64-bit only) |
| macOS Binary (x86_64) | RTCA_1.52.0.tgz |
| macOS Binary (arm64) | RTCA_1.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RTCA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RTCA |
| Bioc Package Browser | https://code.bioconductor.org/browse/RTCA/ |
| Package Short Url | https://bioconductor.org/packages/RTCA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |