RCyjs

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see RCyjs.

Display and manipulate graphs in cytoscape.js

Bioconductor version: 3.17

Interactive viewing and exploration of graphs, connecting R to Cytoscape.js, using websockets.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("RCyjs")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RCyjs")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCyjs")

RCyjs: programmatic access to the web browser-based network viewer, cytoscape.js	HTML	R Script
Reference Manual	PDF
README	Text
NEWS	Text
LICENSE	Text

biocViews	GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version	2.22.0
In Bioconductor since	BioC 3.1 (R-3.2) (9 years)
License	MIT + file LICENSE
Depends	R (>= 3.5.0), BrowserViz(>= 2.7.18), graph(>= 1.56.0)
Imports	methods, httpuv (>= 1.5.0), BiocGenerics, base64enc, utils
System Requirements
URL

Suggests	RUnit, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	RCPA
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	RCyjs_2.22.0.tar.gz
Windows Binary	RCyjs_2.22.0.zip
macOS Binary (x86_64)	RCyjs_2.22.0.tgz
macOS Binary (arm64)	RCyjs_2.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RCyjs
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RCyjs
Bioc Package Browser	https://code.bioconductor.org/browse/RCyjs/
Package Short Url	https://bioconductor.org/packages/RCyjs/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive