CNTools
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see CNTools.
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
Bioconductor version: 3.17
This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data
Author: Jianhua Zhang
Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>
citation("CNTools")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CNTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CNTools")
NCTools HowTo | R Script | |
Reference Manual |
Details
biocViews | CopyNumberVariation, Microarray, Software |
Version | 1.56.0 |
In Bioconductor since | BioC 2.5 (R-2.10) (14.5 years) |
License | LGPL |
Depends | R (>= 2.10), methods, tools, stats, genefilter |
Imports | |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | cghMCR |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | CNTools_1.56.0.tar.gz |
Windows Binary | CNTools_1.56.0.zip (64-bit only) |
macOS Binary (x86_64) | CNTools_1.56.0.tgz |
macOS Binary (arm64) | CNTools_1.56.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/CNTools |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CNTools |
Bioc Package Browser | https://code.bioconductor.org/browse/CNTools/ |
Package Short Url | https://bioconductor.org/packages/CNTools/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.17 | Source Archive |