CGHbase
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see CGHbase.
CGHbase: Base functions and classes for arrayCGH data analysis.
Bioconductor version: 3.17
Contains functions and classes that are needed by arrayCGH packages.
Author: Sjoerd Vosse, Mark van de Wiel
Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>
Citation (from within R, enter
citation("CGHbase")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CGHbase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Infrastructure, Microarray, Software |
| Version | 1.60.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) (15.5 years) |
| License | GPL |
| Depends | R (>= 2.10), methods, Biobase(>= 2.5.5), marray |
| Imports | |
| System Requirements | |
| URL | https://github.com/tgac-vumc/CGHbase |
| Bug Reports | https://github.com/tgac-vumc/CGHbase/issues |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | CGHcall, CGHnormaliter, CGHregions, GeneBreak |
| Imports Me | CGHnormaliter, QDNAseq |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CGHbase_1.60.0.tar.gz |
| Windows Binary | CGHbase_1.60.0.zip (64-bit only) |
| macOS Binary (x86_64) | CGHbase_1.60.0.tgz |
| macOS Binary (arm64) | CGHbase_1.60.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CGHbase |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CGHbase |
| Bioc Package Browser | https://code.bioconductor.org/browse/CGHbase/ |
| Package Short Url | https://bioconductor.org/packages/CGHbase/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |