CGEN

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see CGEN.

An R package for analysis of case-control studies in genetic epidemiology

Bioconductor version: 3.17

This is a package for analysis of case-control data in genetic epidemiology. It provides a set of statistical methods for evaluating gene-environment (or gene-genes) interactions under multiplicative and additive risk models, with or without assuming gene-environment (or gene-gene) independence in the underlying population.

Author: Samsiddhi Bhattacharjee [aut], Nilanjan Chatterjee [aut], Summer Han [aut], Minsun Song [aut], William Wheeler [aut], Matthieu de Rochemonteix [aut], Nilotpal Sanyal [aut], Justin Lee [cre]

Maintainer: Justin Lee <jhylee at stanford.edu>

Citation (from within R, enter citation("CGEN")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CGEN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CGEN")

CGEN Scan Vignette	PDF	R Script
CGEN Vignette	PDF	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, MultipleComparison, SNP, Software
Version	3.36.1
In Bioconductor since	BioC 2.7 (R-2.12) (13.5 years)
License	GPL-2 + file LICENSE
Depends	R (>= 4.0), survival, mvtnorm
Imports	stats, graphics, utils, grDevices
System Requirements
URL

Suggests	cluster
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CGEN_3.36.1.tar.gz
Windows Binary	CGEN_3.36.1.zip (64-bit only)
macOS Binary (x86_64)	CGEN_3.36.1.tgz
macOS Binary (arm64)	CGEN_3.36.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CGEN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CGEN
Bioc Package Browser	https://code.bioconductor.org/browse/CGEN/
Package Short Url	https://bioconductor.org/packages/CGEN/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive