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BAGS

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see BAGS.

A Bayesian Approach for Geneset Selection


Bioconductor version: 3.17

R package providing functions to perform geneset significance analysis over simple cross-sectional data between 2 and 5 phenotypes of interest.

Author: Alejandro Quiroz-Zarate

Maintainer: Alejandro Quiroz-Zarate <aquiroz at jimmy.harvard.edu>

Citation (from within R, enter citation("BAGS")):

Installation

To install this package, start R (version "4.3") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BAGS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BAGS")
BAGS: A Bayesian Approach for Geneset Selection. PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Bayesian, Software
Version 2.40.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License Artistic-2.0
Depends R (>= 2.10), breastCancerVDX, Biobase
Imports
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BAGS_2.40.0.tar.gz
Windows Binary BAGS_2.40.0.zip (64-bit only)
macOS Binary (x86_64) BAGS_2.40.0.tgz
macOS Binary (arm64) BAGS_2.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BAGS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BAGS
Bioc Package Browser https://code.bioconductor.org/browse/BAGS/
Package Short Url https://bioconductor.org/packages/BAGS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive