ArrayExpress

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ArrayExpress.

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ArrayExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")

ArrayExpress: Import and convert ArrayExpress data sets into R object	PDF	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	DataImport, Microarray, OneChannel, Software, TwoChannel
Version	1.60.0
In Bioconductor since	BioC 2.3 (R-2.8) (15.5 years)
License	Artistic-2.0
Depends	R (>= 2.9.0), Biobase(>= 2.4.0)
Imports	oligo, limma, httr, utils, jsonlite, rlang, tools, methods
System Requirements
URL

See More

Suggests	affy
Linking To
Enhances
Depends On Me	DrugVsDisease, maEndToEnd
Imports Me
Suggests Me	Hiiragi2013
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ArrayExpress_1.60.0.tar.gz
Windows Binary	ArrayExpress_1.60.0.zip
macOS Binary (x86_64)	ArrayExpress_1.60.0.tgz
macOS Binary (arm64)	ArrayExpress_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ArrayExpress
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ArrayExpress
Bioc Package Browser	https://code.bioconductor.org/browse/ArrayExpress/
Package Short Url	https://bioconductor.org/packages/ArrayExpress/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive