scpdata
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see scpdata.
Single-Cell Proteomics Data Package
Bioconductor version: 3.16
The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.
Author: Christophe Vanderaa [aut, cre] 
, Laurent Gatto [aut]
Maintainer: Christophe Vanderaa <christophe.vanderaa at uclouvain.be>
citation("scpdata")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scpdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scpdata")| Data Package for Single Cell Proteomics | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, MassSpectrometryData, PackageTypeData, Proteome, ReproducibleResearch, SingleCellData |
| Version | 1.6.0 |
| License | GPL-2 |
| Depends | R (>= 4.2.0), QFeatures, ExperimentHub |
| Imports | utils, AnnotationHub, SingleCellExperiment, S4Vectors |
| System Requirements | |
| URL |
See More
| Suggests | scp, magrittr, dplyr, knitr, BiocStyle, BiocCheck, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scpdata_1.6.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/scpdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scpdata |
| Package Short Url | https://bioconductor.org/packages/scpdata/ |
| Package Downloads Report | Download Stats |