nanotubes
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see nanotubes.
Mouse nanotube CAGE data
Bioconductor version: 3.16
Cap Analysis of Gene Expression (CAGE) data from "Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo" by Bornholdt et al. supplied as CAGE Transcription Start Sites (CTSSs).
Author: Malte Thodberg
Maintainer: Malte Thodberg <maltethodberg at gmail.com>
citation("nanotubes")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nanotubes")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nanotubes")| nanotubes | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, ExpressionData, SequencingData |
| Version | 1.14.0 |
| License | GPL-3 |
| Depends | R (>= 3.6) |
| Imports | |
| System Requirements | |
| URL | https://github.com/MalteThodberg/nanotubes |
| Bug Reports | https://github.com/MalteThodberg/nanotubes/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, GenomicRanges, rtracklayer, CAGEfightR |
| Linking To | |
| Enhances | |
| Depends On Me | CAGEWorkflow |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | nanotubes_1.14.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/nanotubes |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/nanotubes |
| Package Short Url | https://bioconductor.org/packages/nanotubes/ |
| Package Downloads Report | Download Stats |