CopyhelpeR
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see CopyhelpeR.
Helper files for CopywriteR
Bioconductor version: 3.16
This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.
Author: Thomas Kuilman
Maintainer: Oscar Krijgsman <o.krijgsman at nki.nl>
citation("CopyhelpeR")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CopyhelpeR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CopyhelpeR")| CopyhelpeR | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, GenomicSequence, Homo_sapiens |
| Version | 1.30.0 |
| License | GPL-2 |
| Depends | R (>= 3.5.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | CopywriteR |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CopyhelpeR_1.30.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CopyhelpeR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CopyhelpeR |
| Package Short Url | https://bioconductor.org/packages/CopyhelpeR/ |
| Package Downloads Report | Download Stats |