TxDb.Mmusculus.UCSC.mm10.knownGene
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TxDb.Mmusculus.UCSC.mm10.knownGene.
Annotation package for TxDb object(s)
Bioconductor version: 3.16
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
Author: Bioconductor Core Team, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("TxDb.Mmusculus.UCSC.mm10.knownGene")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TxDb.Mmusculus.UCSC.mm10.knownGene")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Mus_musculus, TxDb |
| Version | 3.10.0 |
| License | Artistic-2.0 |
| Depends | GenomicFeatures(>= 1.37.4) |
| Imports | AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | Mus.musculus |
| Imports Me | ChIPQC, profileplyr |
| Suggests Me | annotatr, BSgenome, chipenrich.data, chipseqDB, CRISPRseek, csaw, enhancerHomologSearch, EpiCompare, epivizrData, GenomicFeatures, GenomicRanges, GRaNIE, InPAS, karyoploteR, monaLisa, multicrispr, NanoMethViz, NoRCE, spatzie |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TxDb.Mmusculus.UCSC.mm10.knownGene_3.10.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/ |
| Package Downloads Report | Download Stats |