TxDb.Hsapiens.UCSC.hg38.knownGene
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TxDb.Hsapiens.UCSC.hg38.knownGene.
Annotation package for TxDb object(s)
Bioconductor version: 3.16
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
Author: Bioconductor Core Team, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("TxDb.Hsapiens.UCSC.hg38.knownGene")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TxDb.Hsapiens.UCSC.hg38.knownGene")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, TxDb |
| Version | 3.16.0 |
| License | Artistic-2.0 |
| Depends | GenomicFeatures(>= 1.49.6) |
| Imports | AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | annotation, gpart |
| Imports Me | epimutacions, musicatk, nearBynding, profileplyr, rCGH, rGREAT, signifinder, strandCheckR, uncoverappLib |
| Suggests Me | annotatr, bambu, BSgenome, BUSpaRse, chipenrich.data, ChIPpeakAnno, enhancerHomologSearch, EpiCompare, EpiTxDb, geneAttribution, GenomicDataCommons, GenomicFeatures, genotypeeval, GenVisR, GRaNIE, ideal, NanoMethViz, NoRCE, Organism.dplyr, podkat, scmeth, spatzie, Ularcirc, wiggleplotr, xcoredata |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TxDb.Hsapiens.UCSC.hg38.knownGene_3.16.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg38.knownGene/ |
| Package Downloads Report | Download Stats |