FDb.FANTOM4.promoters.hg19
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see FDb.FANTOM4.promoters.hg19.
Annotation package for FANTOM4 promoters identified from THP-1 cells
Bioconductor version: 3.16
FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified
Author: Tim Triche, Jr.
Maintainer: Tim Triche, Jr. <tim.triche at gmail.com>
Citation (from within R, enter
citation("FDb.FANTOM4.promoters.hg19")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FDb.FANTOM4.promoters.hg19")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Homo_sapiens |
| Version | 1.0.0 |
| License | Artistic-2.0 |
| Depends | GenomicFeatures(>= 1.7.22), Biostrings |
| Imports | GenomicFeatures, AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | BSgenome.Hsapiens.UCSC.hg19, rtracklayer, matrixStats |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | FDb.FANTOM4.promoters.hg19_1.0.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/FDb.FANTOM4.promoters.hg19/ |
| Package Downloads Report | Download Stats |