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tRNAscanImport

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see tRNAscanImport.

Importing a tRNAscan-SE result file as GRanges object


Bioconductor version: 3.16

The package imports the result of tRNAscan-SE as a GRanges object.

Author: Felix G.M. Ernst [aut, cre]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("tRNAscanImport")):

Installation

To install this package, start R (version "4.2") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tRNAscanImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAscanImport")
tRNAscanImport HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Preprocessing, Software, Visualization, WorkflowStep
Version 1.18.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5), GenomicRanges, tRNA
Imports methods, stringr, BiocGenerics, Biostrings, Structstrings, S4Vectors, IRanges, XVector, GenomeInfoDb, rtracklayer, BSgenome, Rsamtools
System Requirements
URL https://github.com/FelixErnst/tRNAscanImport
Bug Reports https://github.com/FelixErnst/tRNAscanImport/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat, ggplot2, BSgenome.Scerevisiae.UCSC.sacCer3
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me Structstrings, tRNA
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tRNAscanImport_1.18.0.tar.gz
Windows Binary tRNAscanImport_1.18.0.zip
macOS Binary (x86_64) tRNAscanImport_1.18.0.tgz
macOS Binary (arm64) tRNAscanImport_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tRNAscanImport
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tRNAscanImport
Bioc Package Browser https://code.bioconductor.org/browse/tRNAscanImport/
Package Short Url https://bioconductor.org/packages/tRNAscanImport/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive