rawrr

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see rawrr.

Direct Access to Orbitrap Data and Beyond

Bioconductor version: 3.16

This package wraps the functionality of the RawFileReader .NET assembly. Within the R environment, spectra and chromatograms are represented by S3 objects (Kockmann T. et al. (2020) ). The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland .

Author: Christian Panse [aut, cre] , Tobias Kockmann [aut]

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("rawrr")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rawrr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rawrr")

Direct Access to Orbitrap Data and Beyond	HTML	R Script
Reference Manual	PDF
NEWS	Text
INSTALL	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	MassSpectrometry, Metabolomics, Proteomics, Software
Version	1.6.1
In Bioconductor since	BioC 3.13 (R-4.1) (3 years)
License	GPL-3
Depends	R (>= 4.1)
Imports	grDevices, graphics, stats, utils
System Requirements	mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows.
URL	https://github.com/fgcz/rawrr/
Bug Reports	https://github.com/fgcz/rawrr/issues

Suggests	BiocStyle(>= 2.5), ExperimentHub, knitr, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat
Linking To
Enhances
Depends On Me
Imports Me	MsBackendRawFileReader
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rawrr_1.6.1.tar.gz
Windows Binary	rawrr_1.6.1.zip
macOS Binary (x86_64)	rawrr_1.6.1.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/rawrr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rawrr
Bioc Package Browser	https://code.bioconductor.org/browse/rawrr/
Package Short Url	https://bioconductor.org/packages/rawrr/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.16	Source Archive