muscle
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see muscle.
Multiple Sequence Alignment with MUSCLE
Bioconductor version: 3.16
MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.
Author: Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.
Maintainer: Alex T. Kalinka <alex.t.kalinka at gmail.com>
Citation (from within R, enter
citation("muscle")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("muscle")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("muscle")| A guide to using muscle | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Alignment, DataImport, Genetics, MultipleSequenceAlignment, SequenceMatching, Sequencing, Software |
| Version | 3.40.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | Unlimited |
| Depends | Biostrings |
| Imports | |
| System Requirements | |
| URL | http://www.drive5.com/muscle/ |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | ptm |
| Suggests Me | geneHapR, seqmagick |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | muscle_3.40.0.tar.gz |
| Windows Binary | muscle_3.40.0.zip |
| macOS Binary (x86_64) | muscle_3.40.0.tgz |
| macOS Binary (arm64) | muscle_3.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/muscle |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/muscle |
| Bioc Package Browser | https://code.bioconductor.org/browse/muscle/ |
| Package Short Url | https://bioconductor.org/packages/muscle/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |