XDE

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see XDE.

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Bioconductor version: 3.16

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("XDE")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XDE")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XDE")

XDE Vignette	PDF	R Script
XdeParameterClass Vignette	PDF	R Script
Reference Manual	PDF
NEWS	Text

biocViews	DifferentialExpression, Microarray, Software
Version	2.44.0
In Bioconductor since	BioC 2.2 (R-2.7) (16 years)
License	LGPL-2
Depends	R (>= 2.10.0), Biobase(>= 2.5.5)
Imports	BiocGenerics, genefilter, graphics, grDevices, gtools, methods, stats, utils, mvtnorm, RColorBrewer, GeneMeta, siggenes
System Requirements
URL

Follow Installation instructions to use this package in your R session.

Source Package	XDE_2.44.0.tar.gz
Windows Binary	XDE_2.44.0.zip
macOS Binary (x86_64)	XDE_2.44.0.tgz
macOS Binary (arm64)	XDE_2.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/XDE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/XDE
Bioc Package Browser	https://code.bioconductor.org/browse/XDE/
Package Short Url	https://bioconductor.org/packages/XDE/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.16	Source Archive