XCIR
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.16 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see XCIR.
XCI-inference
Bioconductor version: 3.16
Models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.
Author: Renan Sauteraud, Dajiang Liu
Maintainer: Renan Sauteraud <rxs575 at psu.edu>
citation("XCIR")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XCIR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Coverage, RNASeq, Sequencing, Software, StatisticalMethod |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | GPL-2 |
| Depends | methods |
| Imports | stats, utils, tools, data.table, Biostrings, IRanges, VariantAnnotation, seqminer, ggplot2, biomaRt, readxl, S4Vectors |
| System Requirements | |
| URL | https://github.com/SRenan/XCIR |
| Bug Reports | https://github.com/SRenan/XCIR/issues |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/XCIR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/XCIR |
| Package Short Url | https://bioconductor.org/packages/XCIR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |