TTMap
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TTMap.
Two-Tier Mapper: a clustering tool based on topological data analysis
Bioconductor version: 3.16
TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.
Author: Rachel Jeitziner
Maintainer: Rachel Jeitziner <rachel.jeitziner at epfl.ch>
citation("TTMap")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TTMap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TTMap")| Manual for the TTMap library | R Script | |
| Reference Manual |
Details
| biocViews | Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL-2 |
| Depends | rgl, colorRamps |
| Imports | grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, airway |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TTMap_1.20.0.tar.gz |
| Windows Binary | TTMap_1.20.0.zip |
| macOS Binary (x86_64) | TTMap_1.20.0.tgz |
| macOS Binary (arm64) | TTMap_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TTMap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TTMap |
| Bioc Package Browser | https://code.bioconductor.org/browse/TTMap/ |
| Package Short Url | https://bioconductor.org/packages/TTMap/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |