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NCIgraph

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see NCIgraph.

Pathways from the NCI Pathways Database


Bioconductor version: 3.16

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

Author: Laurent Jacob

Maintainer: Laurent Jacob <laurent.jacob at gmail.com>

Citation (from within R, enter citation("NCIgraph")):

Installation

To install this package, start R (version "4.2") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NCIgraph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NCIgraph")
NCIgraph: networks from the NCI pathway integrated database as graphNEL objects. PDF R Script
Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GraphAndNetwork, Pathways, Software
Version 1.46.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License GPL-3
Depends R (>= 2.10.0)
Imports graph, KEGGgraph, methods, RBGL, RCy3, R.methodsS3
System Requirements
URL
See More
Suggests Rgraphviz
Linking To
Enhances DEGraph
Depends On Me
Imports Me DEGraph
Suggests Me DEGraph
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NCIgraph_1.46.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/NCIgraph
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NCIgraph
Bioc Package Browser https://code.bioconductor.org/browse/NCIgraph/
Package Short Url https://bioconductor.org/packages/NCIgraph/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive