MultiBaC
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MultiBaC.
Multiomic Batch effect Correction
Bioconductor version: 3.16
MultiBaC is a strategy to correct batch effects from multiomic datasets distributed across different labs or data acquisition events. MultiBaC is the first Batch effect correction algorithm that dealing with batch effect correction in multiomics datasets. MultiBaC is able to remove batch effects across different omics generated within separate batches provided that at least one common omic data type is included in all the batches considered.
Author: person("Manuel", "Ugidos", email = "manuelugidos@gmail.com"), person("Sonia", "Tarazona", email = "sotacam@gmail.com"), person("María José", "Nueda", email = "mjnueda@ua.es")
Maintainer: The package maintainer <manuelugidos at gmail.com>
citation("MultiBaC")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MultiBaC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MultiBaC")| MultiBaC | HTML | R Script |
| Reference Manual |
Details
| biocViews | BatchEffect, DataRepresentation, GeneExpression, PrincipalComponent, Software, StatisticalMethod, Transcription |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | Matrix, ggplot2, MultiAssayExperiment, ropls, graphics, methods, plotrix, grDevices, pcaMethods |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle, devtools |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MultiBaC_1.8.0.tar.gz |
| Windows Binary | MultiBaC_1.8.0.zip |
| macOS Binary (x86_64) | MultiBaC_1.8.0.tgz |
| macOS Binary (arm64) | MultiBaC_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MultiBaC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MultiBaC |
| Bioc Package Browser | https://code.bioconductor.org/browse/MultiBaC/ |
| Package Short Url | https://bioconductor.org/packages/MultiBaC/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |