DirichletMultinomial
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see DirichletMultinomial.
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
Bioconductor version: 3.16
Dirichlet-multinomial mixture models can be used to describe variability in microbial metagenomic data. This package is an interface to code originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15, as discussed further in the man page for this package, ?DirichletMultinomial.
Author: Martin Morgan <martin.morgan at roswellpark.org>
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
citation("DirichletMultinomial")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DirichletMultinomial")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DirichletMultinomial")| An introduction to DirichletMultinomial | R Script | |
| Reference Manual |
Details
| biocViews | Classification, Clustering, ImmunoOncology, Metagenomics, Microbiome, Sequencing, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | LGPL-3 |
| Depends | S4Vectors, IRanges |
| Imports | stats4, methods, BiocGenerics |
| System Requirements | gsl |
| URL |
See More
| Suggests | lattice, parallel, MASS, RColorBrewer, xtable |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | mia, miaViz, TFBSTools |
| Suggests Me | MicrobiotaProcess |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DirichletMultinomial_1.40.0.tar.gz |
| Windows Binary | DirichletMultinomial_1.40.0.zip (64-bit only) |
| macOS Binary (x86_64) | DirichletMultinomial_1.40.0.tgz |
| macOS Binary (arm64) | DirichletMultinomial_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DirichletMultinomial |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DirichletMultinomial |
| Bioc Package Browser | https://code.bioconductor.org/browse/DirichletMultinomial/ |
| Package Short Url | https://bioconductor.org/packages/DirichletMultinomial/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |