BridgeDbR
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see BridgeDbR.
Code for using BridgeDb identifier mapping framework from within R
Bioconductor version: 3.16
Use BridgeDb functions and load identifier mapping databases in R. It uses GitHub, Zenodo, and Figshare if you use this package to download identifier mappings files.
Author: Christ Leemans <christleemans at gmail.com>, Egon Willighagen <egon.willighagen at gmail.com>, Denise Slenter, Anwesha Bohler <anweshabohler at gmail.com>, Lars Eijssen <l.eijssen at maastrichtuniversity.nl>, Tooba Abbassi-Daloii
Maintainer: Egon Willighagen <egon.willighagen at gmail.com>
citation("BridgeDbR")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BridgeDbR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BridgeDbR")| Tutorial | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, Cheminformatics, Metabolomics, Software |
| Version | 2.8.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | AGPL-3 |
| Depends | R (>= 3.3.0), rJava |
| Imports | curl |
| System Requirements | |
| URL | https://github.com/bridgedb/BridgeDbR |
| Bug Reports | https://github.com/bridgedb/BridgeDbR/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | rWikiPathways |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BridgeDbR_2.8.0.tar.gz |
| Windows Binary | BridgeDbR_2.8.0.zip |
| macOS Binary (x86_64) | BridgeDbR_2.8.0.tgz |
| macOS Binary (arm64) | BridgeDbR_2.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BridgeDbR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BridgeDbR |
| Bioc Package Browser | https://code.bioconductor.org/browse/BridgeDbR/ |
| Package Short Url | https://bioconductor.org/packages/BridgeDbR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |