epimutacionsData
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see epimutacionsData.
Data for epimutacions package
Bioconductor version: 3.15
This package includes the data necessary to run functions and examples in epimutacions package. Collection of DNA methylation data. The package contains 2 datasets: (1) Control ( GEO: GSE104812), (GEO: GSE97362) case samples; and (2) reference panel (GEO: GSE127824). It also contains candidate regions to be epimutations in 450k methylation arrays.
Author: Leire Abarrategui [aut, cre], Juan R. Gonzalez [aut], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut]
Maintainer: Leire Abarrategui <abarrategui.leire at gmail.com>
citation("epimutacionsData")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epimutacionsData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epimutacionsData")| data repository for epimutacions package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylationArrayData, MicroarrayData |
| Version | 1.0.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 4.2.0) |
| Imports | |
| System Requirements | |
| URL | https://github.com/LeireAbarrategui/epimutacionsData |
| Bug Reports | https://github.com/LeireAbarrategui/epimutacionsData/issues |
See More
| Suggests | rmarkdown, BiocStyle, knitr, ExperimentHub, minfi |
| Linking To | |
| Enhances | |
| Depends On Me | epimutacions |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | epimutacionsData_1.0.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/epimutacionsData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epimutacionsData |
| Package Short Url | https://bioconductor.org/packages/epimutacionsData/ |
| Package Downloads Report | Download Stats |