SCATEData

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SCATEData.

Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)

Bioconductor version: 3.15

SCATEData is an ExperimentHub package for SCATE which is a software tool for extracting and enhancing the sparse and discrete Single-cell ATAC-seq Signal.

Author: Zhicheng Ji [aut], Weiqiang Zhou [aut], Wenpin Hou [cre, aut] , Hongkai Ji [aut]

Maintainer: Wenpin Hou <wp.hou3 at gmail.com>

Citation (from within R, enter citation("SCATEData")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SCATEData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SCATEData")

1. SCATEData package	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub
Version	1.6.0
License	MIT + file LICENSE
Depends	R (>= 3.5.0), ExperimentHub, GenomicAlignments, GenomicRanges, base
Imports	utils
System Requirements
URL
Bug Reports	https://github.com/Winnie09/SCATEData/issues

Suggests	knitr, rmarkdown
Linking To
Enhances
Depends On Me	SCATE
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SCATEData_1.6.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/SCATEData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SCATEData
Package Short Url	https://bioconductor.org/packages/SCATEData/
Package Downloads Report	Download Stats