LiebermanAidenHiC2009

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see LiebermanAidenHiC2009.

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

Bioconductor version: 3.15

This package provides data that were presented in the article "Comprehensive mapping of long-range interactions reveals folding principles of the human genome", Science 2009 Oct 9;326(5950):289-93. PMID: 19815776

Author: Wolfgang Huber, Felix Klein

Maintainer: Felix Klein <fklein at embl.de>

Citation (from within R, enter citation("LiebermanAidenHiC2009")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LiebermanAidenHiC2009")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LiebermanAidenHiC2009")

Exploration of HiC data	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ChIPSeqData, ChipOnChipData, DNASeqData, ENCODE, ExperimentData, GEO, Genome, NCI, SequencingData, SmallRNAData, miRNAData
Version	0.34.0
License	LGPL
Depends	KernSmooth, IRanges
Imports
System Requirements
URL

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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	LiebermanAidenHiC2009_0.34.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/LiebermanAidenHiC2009
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/LiebermanAidenHiC2009
Package Short Url	https://bioconductor.org/packages/LiebermanAidenHiC2009/
Package Downloads Report	Download Stats